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""" Build swig, f2py, pyrex sources.
"""
import os
import re
import sys
import shlex
import copy
from distutils.command import build_ext
from distutils.dep_util import newer_group, newer
from distutils.util import get_platform
from distutils.errors import DistutilsError, DistutilsSetupError
def have_pyrex():
try:
import Pyrex.Compiler.Main
return True
except ImportError:
return False
# this import can't be done here, as it uses numpy stuff only available
# after it's installed
#import numpy.f2py
from numpy.distutils import log
from numpy.distutils.misc_util import fortran_ext_match, \
appendpath, is_string, is_sequence, get_cmd
from numpy.distutils.from_template import process_file as process_f_file
from numpy.distutils.conv_template import process_file as process_c_file
def subst_vars(target, source, d):
"""Substitute any occurence of @foo@ by d['foo'] from source file into
target."""
var = re.compile('@([a-zA-Z_]+)@')
fs = open(source, 'r')
try:
ft = open(target, 'w')
try:
for l in fs.readlines():
m = var.search(l)
if m:
ft.write(l.replace('@%s@' % m.group(1), d[m.group(1)]))
else:
ft.write(l)
finally:
ft.close()
finally:
fs.close()
class build_src(build_ext.build_ext):
description = "build sources from SWIG, F2PY files or a function"
user_options = [
('build-src=', 'd', "directory to \"build\" sources to"),
('f2py-opts=', None, "list of f2py command line options"),
('swig=', None, "path to the SWIG executable"),
('swig-opts=', None, "list of SWIG command line options"),
('swig-cpp', None, "make SWIG create C++ files (default is autodetected from sources)"),
('f2pyflags=', None, "additional flags to f2py (use --f2py-opts= instead)"), # obsolete
('swigflags=', None, "additional flags to swig (use --swig-opts= instead)"), # obsolete
('force', 'f', "forcibly build everything (ignore file timestamps)"),
('inplace', 'i',
"ignore build-lib and put compiled extensions into the source " +
"directory alongside your pure Python modules"),
]
boolean_options = ['force','inplace']
help_options = []
def initialize_options(self):
self.extensions = None
self.package = None
self.py_modules = None
self.py_modules_dict = None
self.build_src = None
self.build_lib = None
self.build_base = None
self.force = None
self.inplace = None
self.package_dir = None
self.f2pyflags = None # obsolete
self.f2py_opts = None
self.swigflags = None # obsolete
self.swig_opts = None
self.swig_cpp = None
self.swig = None
def finalize_options(self):
self.set_undefined_options('build',
('build_base', 'build_base'),
('build_lib', 'build_lib'),
('force', 'force'))
if self.package is None:
self.package = self.distribution.ext_package
self.extensions = self.distribution.ext_modules
self.libraries = self.distribution.libraries or []
self.py_modules = self.distribution.py_modules or []
self.data_files = self.distribution.data_files or []
if self.build_src is None:
plat_specifier = ".%s-%s" % (get_platform(), sys.version[0:3])
self.build_src = os.path.join(self.build_base, 'src'+plat_specifier)
# py_modules_dict is used in build_py.find_package_modules
self.py_modules_dict = {}
if self.f2pyflags:
if self.f2py_opts:
log.warn('ignoring --f2pyflags as --f2py-opts already used')
else:
self.f2py_opts = self.f2pyflags
self.f2pyflags = None
if self.f2py_opts is None:
self.f2py_opts = []
else:
self.f2py_opts = shlex.split(self.f2py_opts)
if self.swigflags:
if self.swig_opts:
log.warn('ignoring --swigflags as --swig-opts already used')
else:
self.swig_opts = self.swigflags
self.swigflags = None
if self.swig_opts is None:
self.swig_opts = []
else:
self.swig_opts = shlex.split(self.swig_opts)
# use options from build_ext command
build_ext = self.get_finalized_command('build_ext')
if self.inplace is None:
self.inplace = build_ext.inplace
if self.swig_cpp is None:
self.swig_cpp = build_ext.swig_cpp
for c in ['swig','swig_opt']:
o = '--'+c.replace('_','-')
v = getattr(build_ext,c,None)
if v:
if getattr(self,c):
log.warn('both build_src and build_ext define %s option' % (o))
else:
log.info('using "%s=%s" option from build_ext command' % (o,v))
setattr(self, c, v)
def run(self):
log.info("build_src")
if not (self.extensions or self.libraries):
return
self.build_sources()
def build_sources(self):
if self.inplace:
self.get_package_dir = \
self.get_finalized_command('build_py').get_package_dir
self.build_py_modules_sources()
for libname_info in self.libraries:
self.build_library_sources(*libname_info)
if self.extensions:
self.check_extensions_list(self.extensions)
for ext in self.extensions:
self.build_extension_sources(ext)
self.build_data_files_sources()
self.build_npy_pkg_config()
def build_data_files_sources(self):
if not self.data_files:
return
log.info('building data_files sources')
from numpy.distutils.misc_util import get_data_files
new_data_files = []
for data in self.data_files:
if isinstance(data,str):
new_data_files.append(data)
elif isinstance(data,tuple):
d,files = data
if self.inplace:
build_dir = self.get_package_dir('.'.join(d.split(os.sep)))
else:
build_dir = os.path.join(self.build_src,d)
funcs = filter(callable,files)
files = filter(lambda f:not callable(f), files)
for f in funcs:
if f.func_code.co_argcount==1:
s = f(build_dir)
else:
s = f()
if s is not None:
if isinstance(s,list):
files.extend(s)
elif isinstance(s,str):
files.append(s)
else:
raise TypeError(repr(s))
filenames = get_data_files((d,files))
new_data_files.append((d, filenames))
else:
raise TypeError(repr(data))
self.data_files[:] = new_data_files
def _build_npy_pkg_config(self, info, gd):
import shutil
template, install_dir, subst_dict = info
template_dir = os.path.dirname(template)
for k, v in gd.items():
subst_dict[k] = v
if self.inplace == 1:
generated_dir = os.path.join(template_dir, install_dir)
else:
generated_dir = os.path.join(self.build_src, template_dir,
install_dir)
generated = os.path.basename(os.path.splitext(template)[0])
generated_path = os.path.join(generated_dir, generated)
if not os.path.exists(generated_dir):
os.makedirs(generated_dir)
subst_vars(generated_path, template, subst_dict)
# Where to install relatively to install prefix
full_install_dir = os.path.join(template_dir, install_dir)
return full_install_dir, generated_path
def build_npy_pkg_config(self):
log.info('build_src: building npy-pkg config files')
# XXX: another ugly workaround to circumvent distutils brain damage. We
# need the install prefix here, but finalizing the options of the
# install command when only building sources cause error. Instead, we
# copy the install command instance, and finalize the copy so that it
# does not disrupt how distutils want to do things when with the
# original install command instance.
install_cmd = copy.copy(get_cmd('install'))
if not install_cmd.finalized == 1:
install_cmd.finalize_options()
build_npkg = False
gd = {}
if self.inplace == 1:
top_prefix = '.'
build_npkg = True
elif hasattr(install_cmd, 'install_libbase'):
top_prefix = install_cmd.install_libbase
build_npkg = True
if build_npkg:
for pkg, infos in self.distribution.installed_pkg_config.items():
pkg_path = self.distribution.package_dir[pkg]
prefix = os.path.join(os.path.abspath(top_prefix), pkg_path)
d = {'prefix': prefix}
for info in infos:
install_dir, generated = self._build_npy_pkg_config(info, d)
self.distribution.data_files.append((install_dir,
[generated]))
def build_py_modules_sources(self):
if not self.py_modules:
return
log.info('building py_modules sources')
new_py_modules = []
for source in self.py_modules:
if is_sequence(source) and len(source)==3:
package, module_base, source = source
if self.inplace:
build_dir = self.get_package_dir(package)
else:
build_dir = os.path.join(self.build_src,
os.path.join(*package.split('.')))
if callable(source):
target = os.path.join(build_dir, module_base + '.py')
source = source(target)
if source is None:
continue
modules = [(package, module_base, source)]
if package not in self.py_modules_dict:
self.py_modules_dict[package] = []
self.py_modules_dict[package] += modules
else:
new_py_modules.append(source)
self.py_modules[:] = new_py_modules
def build_library_sources(self, lib_name, build_info):
sources = list(build_info.get('sources',[]))
if not sources:
return
log.info('building library "%s" sources' % (lib_name))
sources = self.generate_sources(sources, (lib_name, build_info))
sources = self.template_sources(sources, (lib_name, build_info))
sources, h_files = self.filter_h_files(sources)
if h_files:
log.info('%s - nothing done with h_files = %s',
self.package, h_files)
#for f in h_files:
# self.distribution.headers.append((lib_name,f))
build_info['sources'] = sources
return
def build_extension_sources(self, ext):
sources = list(ext.sources)
log.info('building extension "%s" sources' % (ext.name))
fullname = self.get_ext_fullname(ext.name)
modpath = fullname.split('.')
package = '.'.join(modpath[0:-1])
if self.inplace:
self.ext_target_dir = self.get_package_dir(package)
sources = self.generate_sources(sources, ext)
sources = self.template_sources(sources, ext)
sources = self.swig_sources(sources, ext)
sources = self.f2py_sources(sources, ext)
sources = self.pyrex_sources(sources, ext)
sources, py_files = self.filter_py_files(sources)
if package not in self.py_modules_dict:
self.py_modules_dict[package] = []
modules = []
for f in py_files:
module = os.path.splitext(os.path.basename(f))[0]
modules.append((package, module, f))
self.py_modules_dict[package] += modules
sources, h_files = self.filter_h_files(sources)
if h_files:
log.info('%s - nothing done with h_files = %s',
package, h_files)
#for f in h_files:
# self.distribution.headers.append((package,f))
ext.sources = sources
def generate_sources(self, sources, extension):
new_sources = []
func_sources = []
for source in sources:
if is_string(source):
new_sources.append(source)
else:
func_sources.append(source)
if not func_sources:
return new_sources
if self.inplace and not is_sequence(extension):
build_dir = self.ext_target_dir
else:
if is_sequence(extension):
name = extension[0]
# if 'include_dirs' not in extension[1]:
# extension[1]['include_dirs'] = []
# incl_dirs = extension[1]['include_dirs']
else:
name = extension.name
# incl_dirs = extension.include_dirs
#if self.build_src not in incl_dirs:
# incl_dirs.append(self.build_src)
build_dir = os.path.join(*([self.build_src]\
+name.split('.')[:-1]))
self.mkpath(build_dir)
for func in func_sources:
source = func(extension, build_dir)
if not source:
continue
if is_sequence(source):
[log.info(" adding '%s' to sources." % (s,)) for s in source]
new_sources.extend(source)
else:
log.info(" adding '%s' to sources." % (source,))
new_sources.append(source)
return new_sources
def filter_py_files(self, sources):
return self.filter_files(sources,['.py'])
def filter_h_files(self, sources):
return self.filter_files(sources,['.h','.hpp','.inc'])
def filter_files(self, sources, exts = []):
new_sources = []
files = []
for source in sources:
(base, ext) = os.path.splitext(source)
if ext in exts:
files.append(source)
else:
new_sources.append(source)
return new_sources, files
def template_sources(self, sources, extension):
new_sources = []
if is_sequence(extension):
depends = extension[1].get('depends')
include_dirs = extension[1].get('include_dirs')
else:
depends = extension.depends
include_dirs = extension.include_dirs
for source in sources:
(base, ext) = os.path.splitext(source)
if ext == '.src': # Template file
if self.inplace:
target_dir = os.path.dirname(base)
else:
target_dir = appendpath(self.build_src, os.path.dirname(base))
self.mkpath(target_dir)
target_file = os.path.join(target_dir,os.path.basename(base))
if (self.force or newer_group([source] + depends, target_file)):
if _f_pyf_ext_match(base):
log.info("from_template:> %s" % (target_file))
outstr = process_f_file(source)
else:
log.info("conv_template:> %s" % (target_file))
outstr = process_c_file(source)
fid = open(target_file,'w')
fid.write(outstr)
fid.close()
if _header_ext_match(target_file):
d = os.path.dirname(target_file)
if d not in include_dirs:
log.info(" adding '%s' to include_dirs." % (d))
include_dirs.append(d)
new_sources.append(target_file)
else:
new_sources.append(source)
return new_sources
def pyrex_sources(self, sources, extension):
new_sources = []
ext_name = extension.name.split('.')[-1]
for source in sources:
(base, ext) = os.path.splitext(source)
if ext == '.pyx':
target_file = self.generate_a_pyrex_source(base, ext_name,
source,
extension)
new_sources.append(target_file)
else:
new_sources.append(source)
return new_sources
def generate_a_pyrex_source(self, base, ext_name, source, extension):
if self.inplace or not have_pyrex():
target_dir = os.path.dirname(base)
else:
target_dir = appendpath(self.build_src, os.path.dirname(base))
target_file = os.path.join(target_dir, ext_name + '.c')
depends = [source] + extension.depends
if self.force or newer_group(depends, target_file, 'newer'):
if have_pyrex():
import Pyrex.Compiler.Main
log.info("pyrexc:> %s" % (target_file))
self.mkpath(target_dir)
options = Pyrex.Compiler.Main.CompilationOptions(
defaults=Pyrex.Compiler.Main.default_options,
include_path=extension.include_dirs,
output_file=target_file)
pyrex_result = Pyrex.Compiler.Main.compile(source,
options=options)
if pyrex_result.num_errors != 0:
raise DistutilsError,"%d errors while compiling %r with Pyrex" \
% (pyrex_result.num_errors, source)
elif os.path.isfile(target_file):
log.warn("Pyrex required for compiling %r but not available,"\
" using old target %r"\
% (source, target_file))
else:
raise DistutilsError("Pyrex required for compiling %r"\
" but notavailable" % (source,))
return target_file
def f2py_sources(self, sources, extension):
new_sources = []
f2py_sources = []
f_sources = []
f2py_targets = {}
target_dirs = []
ext_name = extension.name.split('.')[-1]
skip_f2py = 0
for source in sources:
(base, ext) = os.path.splitext(source)
if ext == '.pyf': # F2PY interface file
if self.inplace:
target_dir = os.path.dirname(base)
else:
target_dir = appendpath(self.build_src, os.path.dirname(base))
if os.path.isfile(source):
name = get_f2py_modulename(source)
if name != ext_name:
raise DistutilsSetupError('mismatch of extension names: %s '
'provides %r but expected %r' % (
source, name, ext_name))
target_file = os.path.join(target_dir,name+'module.c')
else:
log.debug(' source %s does not exist: skipping f2py\'ing.' \
% (source))
name = ext_name
skip_f2py = 1
target_file = os.path.join(target_dir,name+'module.c')
if not os.path.isfile(target_file):
log.warn(' target %s does not exist:\n '\
'Assuming %smodule.c was generated with '\
'"build_src --inplace" command.' \
% (target_file, name))
target_dir = os.path.dirname(base)
target_file = os.path.join(target_dir,name+'module.c')
if not os.path.isfile(target_file):
raise DistutilsSetupError("%r missing" % (target_file,))
log.info(' Yes! Using %r as up-to-date target.' \
% (target_file))
target_dirs.append(target_dir)
f2py_sources.append(source)
f2py_targets[source] = target_file
new_sources.append(target_file)
elif fortran_ext_match(ext):
f_sources.append(source)
else:
new_sources.append(source)
if not (f2py_sources or f_sources):
return new_sources
for d in target_dirs:
self.mkpath(d)
f2py_options = extension.f2py_options + self.f2py_opts
if self.distribution.libraries:
for name,build_info in self.distribution.libraries:
if name in extension.libraries:
f2py_options.extend(build_info.get('f2py_options',[]))
log.info("f2py options: %s" % (f2py_options))
if f2py_sources:
if len(f2py_sources) != 1:
raise DistutilsSetupError(
'only one .pyf file is allowed per extension module but got'\
' more: %r' % (f2py_sources,))
source = f2py_sources[0]
target_file = f2py_targets[source]
target_dir = os.path.dirname(target_file) or '.'
depends = [source] + extension.depends
if (self.force or newer_group(depends, target_file,'newer')) \
and not skip_f2py:
log.info("f2py: %s" % (source))
import numpy.f2py
numpy.f2py.run_main(f2py_options
+ ['--build-dir',target_dir,source])
else:
log.debug(" skipping '%s' f2py interface (up-to-date)" % (source))
else:
#XXX TODO: --inplace support for sdist command
if is_sequence(extension):
name = extension[0]
else: name = extension.name
target_dir = os.path.join(*([self.build_src]\
+name.split('.')[:-1]))
target_file = os.path.join(target_dir,ext_name + 'module.c')
new_sources.append(target_file)
depends = f_sources + extension.depends
if (self.force or newer_group(depends, target_file, 'newer')) \
and not skip_f2py:
log.info("f2py:> %s" % (target_file))
self.mkpath(target_dir)
import numpy.f2py
numpy.f2py.run_main(f2py_options + ['--lower',
'--build-dir',target_dir]+\
['-m',ext_name]+f_sources)
else:
log.debug(" skipping f2py fortran files for '%s' (up-to-date)"\
% (target_file))
if not os.path.isfile(target_file):
raise DistutilsError("f2py target file %r not generated" % (target_file,))
target_c = os.path.join(self.build_src,'fortranobject.c')
target_h = os.path.join(self.build_src,'fortranobject.h')
log.info(" adding '%s' to sources." % (target_c))
new_sources.append(target_c)
if self.build_src not in extension.include_dirs:
log.info(" adding '%s' to include_dirs." \
% (self.build_src))
extension.include_dirs.append(self.build_src)
if not skip_f2py:
import numpy.f2py
d = os.path.dirname(numpy.f2py.__file__)
source_c = os.path.join(d,'src','fortranobject.c')
source_h = os.path.join(d,'src','fortranobject.h')
if newer(source_c,target_c) or newer(source_h,target_h):
self.mkpath(os.path.dirname(target_c))
self.copy_file(source_c,target_c)
self.copy_file(source_h,target_h)
else:
if not os.path.isfile(target_c):
raise DistutilsSetupError("f2py target_c file %r not found" % (target_c,))
if not os.path.isfile(target_h):
raise DistutilsSetupError("f2py target_h file %r not found" % (target_h,))
for name_ext in ['-f2pywrappers.f','-f2pywrappers2.f90']:
filename = os.path.join(target_dir,ext_name + name_ext)
if os.path.isfile(filename):
log.info(" adding '%s' to sources." % (filename))
f_sources.append(filename)
return new_sources + f_sources
def swig_sources(self, sources, extension):
# Assuming SWIG 1.3.14 or later. See compatibility note in
# http://www.swig.org/Doc1.3/Python.html#Python_nn6
new_sources = []
swig_sources = []
swig_targets = {}
target_dirs = []
py_files = [] # swig generated .py files
target_ext = '.c'
if self.swig_cpp:
typ = 'c++'
is_cpp = True
else:
typ = None
is_cpp = False
skip_swig = 0
ext_name = extension.name.split('.')[-1]
for source in sources:
(base, ext) = os.path.splitext(source)
if ext == '.i': # SWIG interface file
if self.inplace:
target_dir = os.path.dirname(base)
py_target_dir = self.ext_target_dir
else:
target_dir = appendpath(self.build_src, os.path.dirname(base))
py_target_dir = target_dir
if os.path.isfile(source):
name = get_swig_modulename(source)
if name != ext_name[1:]:
raise DistutilsSetupError(
'mismatch of extension names: %s provides %r'
' but expected %r' % (source, name, ext_name[1:]))
if typ is None:
typ = get_swig_target(source)
is_cpp = typ=='c++'
if is_cpp: target_ext = '.cpp'
else:
typ2 = get_swig_target(source)
if typ!=typ2:
log.warn('expected %r but source %r defines %r swig target' \
% (typ, source, typ2))
if typ2=='c++':
log.warn('resetting swig target to c++ (some targets may have .c extension)')
is_cpp = True
target_ext = '.cpp'
else:
log.warn('assuming that %r has c++ swig target' % (source))
target_file = os.path.join(target_dir,'%s_wrap%s' \
% (name, target_ext))
else:
log.warn(' source %s does not exist: skipping swig\'ing.' \
% (source))
name = ext_name[1:]
skip_swig = 1
target_file = _find_swig_target(target_dir, name)
if not os.path.isfile(target_file):
log.warn(' target %s does not exist:\n '\
'Assuming %s_wrap.{c,cpp} was generated with '\
'"build_src --inplace" command.' \
% (target_file, name))
target_dir = os.path.dirname(base)
target_file = _find_swig_target(target_dir, name)
if not os.path.isfile(target_file):
raise DistutilsSetupError("%r missing" % (target_file,))
log.warn(' Yes! Using %r as up-to-date target.' \
% (target_file))
target_dirs.append(target_dir)
new_sources.append(target_file)
py_files.append(os.path.join(py_target_dir, name+'.py'))
swig_sources.append(source)
swig_targets[source] = new_sources[-1]
else:
new_sources.append(source)
if not swig_sources:
return new_sources
if skip_swig:
return new_sources + py_files
for d in target_dirs:
self.mkpath(d)
swig = self.swig or self.find_swig()
swig_cmd = [swig, "-python"]
if is_cpp:
swig_cmd.append('-c++')
for d in extension.include_dirs:
swig_cmd.append('-I'+d)
for source in swig_sources:
target = swig_targets[source]
depends = [source] + extension.depends
if self.force or newer_group(depends, target, 'newer'):
log.info("%s: %s" % (os.path.basename(swig) \
+ (is_cpp and '++' or ''), source))
self.spawn(swig_cmd + self.swig_opts \
+ ["-o", target, '-outdir', py_target_dir, source])
else:
log.debug(" skipping '%s' swig interface (up-to-date)" \
% (source))
return new_sources + py_files
_f_pyf_ext_match = re.compile(r'.*[.](f90|f95|f77|for|ftn|f|pyf)\Z',re.I).match
_header_ext_match = re.compile(r'.*[.](inc|h|hpp)\Z',re.I).match
#### SWIG related auxiliary functions ####
_swig_module_name_match = re.compile(r'\s*%module\s*(.*\(\s*package\s*=\s*"(?P<package>[\w_]+)".*\)|)\s*(?P<name>[\w_]+)',
re.I).match
_has_c_header = re.compile(r'-[*]-\s*c\s*-[*]-',re.I).search
_has_cpp_header = re.compile(r'-[*]-\s*c[+][+]\s*-[*]-',re.I).search
def get_swig_target(source):
f = open(source,'r')
result = 'c'
line = f.readline()
if _has_cpp_header(line):
result = 'c++'
if _has_c_header(line):
result = 'c'
f.close()
return result
def get_swig_modulename(source):
f = open(source,'r')
f_readlines = getattr(f,'xreadlines',f.readlines)
name = None
for line in f_readlines():
m = _swig_module_name_match(line)
if m:
name = m.group('name')
break
f.close()
return name
def _find_swig_target(target_dir,name):
for ext in ['.cpp','.c']:
target = os.path.join(target_dir,'%s_wrap%s' % (name, ext))
if os.path.isfile(target):
break
return target
#### F2PY related auxiliary functions ####
_f2py_module_name_match = re.compile(r'\s*python\s*module\s*(?P<name>[\w_]+)',
re.I).match
_f2py_user_module_name_match = re.compile(r'\s*python\s*module\s*(?P<name>[\w_]*?'\
'__user__[\w_]*)',re.I).match
def get_f2py_modulename(source):
name = None
f = open(source)
f_readlines = getattr(f,'xreadlines',f.readlines)
for line in f_readlines():
m = _f2py_module_name_match(line)
if m:
if _f2py_user_module_name_match(line): # skip *__user__* names
continue
name = m.group('name')
break
f.close()
return name
##########################################
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